Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
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Exploring Allosteric Communication in Multiple States of the Bacterial Ribosome Using Residue Network Analysis
TURKISH JOURNAL OF BIOLOGY, Vol. 42, No. 5, Ekim 2018, s. 392-404, ISSN: 13000152
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Mechanism of Cohesin Loading onto Chromosomes A Conformational Dynamics Study
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Exploring allosteric mechanisms of CXCR4 and implications in drug design
The International Symposium on Health Informatics and Bioinformatics HIBIT 2020, İstanbul/TÜRKİYE, 22 Ekim 2020
İNAN TUĞÇE, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Collective Dynamics of Eco-RI DNA Complex by Elastic Network Model and Molecular Dynamics Simulations
Journal of Biomolecular Structure and Dynamics, Vol. 24, No. 1, Ağustos 2006, s. 1-15, ISSN: 0739-1102
DORUKER TURGUT PEMRA,NILSSON LENNART,KÜRKÇÜOĞLU AYŞE ÖZGE
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Mikrobiyal Biyopolimerler: Polihidroksialkanotların Biyoplastik Üretiminde Kullanımı Üzerine Genel Değerlendirme
Çevre Bilim ve Teknoloji, Kasım 2018, ISSN: 1302-5627
ÇOKGÖR EMİNE,PALA ÖZKÖK İLKE,GÜVEN DİĞDEM,ZENGİN BALCI GÜLSÜM EMEL,OKUTMAN TAŞ DİDEM,YAĞCI NEVİN,SAYI UÇAR NİLAY,ÖZYILDIZ GÖKŞİN,İNSEL HAYRETTİN GÜÇLÜ
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Coupled dynamics around the ribosomal tunnel focusing on macrolide discrimination
The International Symposium on Health Informatics and Bioinformatics HIBIT 2020, İstanbul/TÜRKİYE, 22 Ekim 2020
YÜCE MERVE, GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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The Ribosome Structure Controls and Directs mRNA Entry, Translocation and Exit Dynamics
Physical Biology, Vol. 5, No. 4, Aralık 2008, s. 46005, ISSN: 1478-3975
KÜRKÇÜOĞLU AYŞE ÖZGE,DORUKER TURGUT PEMRA,SEN TANER Z,KLOCZKOWSKI ANDRZEJ ,JERNIGAN ROBERT L
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Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Frontiers in Molecular Biosciences, Vol. 7, Eylül 2020, ISSN: 2296-889X
GÜZEL PELİN,YILDIRIM HATİCE ZEYNEP,YÜCE MERVE,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Collective Dynamics of Large Proteins from Mixed Coarse Grained Elastic Network Model
QSAR Combinatorial Science, Vol. 24, No. 4, Haziran 2005, s. 443-448, ISSN: 1611-020X
KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
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Coupled dynamics around the ribosomal tunnel focusing on macrolide discrimination
The International Symposium on Health Informatics and Bioinformatics HIBIT 2020, İstanbul/TÜRKİYE, 22 Ekim 2020
YÜCE MERVE, GÜZEL PELİN, KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Using residue interaction networks to explore novel drug target sites on protein structures of antibiotic-resistant species: ribosome complex and glycolytic enzymes
IC2AR 2022: 5th International Caparica Conference in Antibiotic Resistance 2022, 5 Eylül 2022
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE, İNAN TUĞÇE, YÜCE MERVE, ATEŞ BERİL, SARICA ZEHRA
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Focused Functional Dynamics of Supramolecules by Use of a Mixed Resolution Elastic Network Model
Biophysical Journal, Vol. 97, No. 4, Ağustos 2009, s. 1178-1187, ISSN: 00063495
KÜRKÇÜOĞLU AYŞE ÖZGE,TURGUT OSMAN TEOMAN,CANSU SERTAN,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
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Conformational Dynamics of Bacterial Trigger Factor in Apo and Ribosome-Bound States
PLOS ONE, Vol. 12, No. 4, Nisan 2017, s. 176262, ISSN: 1932-6203
CAN MEHMET TARIK,KURKCUOGLU ZEYNEP,EZEROGLU GOKCE,UYAR ARZU,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,DORUKER TURGUT PEMRA
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Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome
Journal of Chemical Information and Modeling, Vol. 60, No. 12, Aralık 2020, s. 6447-6461, ISSN: 1549-9596
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,GUNES M UNAL,HALİLOĞLU TÜRKAN
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Loop Motions of Triosephosphate Isomerase Observed with Elastic Networks
Biochemistry, Vol. 45, No. 4, Ocak 2006, s. 1173-1182, ISSN: 0006-2960
KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
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Mikrobiyal Biyopolimerler: Polihidroksialkanotların Biyoplastik Üretiminde Kullanımı Üzerine Genel Değerlendirme
Çevre Bilim ve Teknoloji, Kasım 2018, ISSN: 1302-5627
ÇOKGÖR EMİNE,PALA ÖZKÖK İLKE,GÜVEN DİĞDEM,ZENGİN BALCI GÜLSÜM EMEL,OKUTMAN TAŞ DİDEM,YAĞCI NEVİN,SAYI UÇAR NİLAY,ÖZYILDIZ GÖKŞİN,İNSEL HAYRETTİN GÜÇLÜ
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Coarse-Graining the Nano-Machine Ribosome to Elucidate its Functional Dynamics Ribosomes: Molecular Structure Role in Biological Functions and Implications for Genetic Diseases
2013, Nova Science Publishers, Inc
KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE,DORUKER TURGUT PEMRA
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Identification of Potential Allosteric Communication Pathways Between Functional Sites of the Bacterial Ribosome by Graph and Elastic Network Models
Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1861, No. 12, Aralık 2017, s. 3131-3141, ISSN: 03044165
GÜZEL PELİN,KÜRKÇÜOĞLU LEVİTAS AYŞE ÖZGE
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Mixed Levels of Coarse Graining of Large Proteins Using Elastic Network Model Succeeds in Extracting the Slowest Motions
Polymer, Vol. 45, No. 2, Ocak 2004, s. 649-657, ISSN: 00323861
KÜRKÇÜOĞLU AYŞE ÖZGE,JERNIGAN ROBERT L,DORUKER TURGUT PEMRA
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